Detailed information of SNP:
|
SNP ID:
sf0220858714(Gbrowse)
Chromosome: chr02 Position: 20858714 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 56.59% | 43.41% |
| All Indica | 799 | 94.24% | 5.76% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220858714 | A->G | LOC_Os02g34800(LOC_Os02g34800.1) | Synonymous |