Detailed information of SNP:
|
SNP ID:
sf0220863349(Gbrowse)
Chromosome: chr02 Position: 20863349 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.87% | 43.13% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220863349 | T->C | LOC_Os02g34810(LOC_Os02g34810.1) | INTRON |