Detailed information of SNP:
|
SNP ID:
sf0220933879(Gbrowse)
Chromosome: chr02 Position: 20933879 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 91.31% | 8.69% |
| All Indica | 798 | 92.48% | 7.52% |
| All Japonica | 495 | 88.08% | 11.92% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 87.73% | 12.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 333 | 87.39% | 12.61% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220933879 | G->A | LOC_Os02g34900(LOC_Os02g34900.1) | INTRON |