Detailed information of SNP:
|
SNP ID:
sf0220935253(Gbrowse)
Chromosome: chr02 Position: 20935253 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 94.29% | 5.71% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 497 | 87.32% | 12.68% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 86.27% | 13.73% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220935253 | G->A | LOC_Os02g34900(LOC_Os02g34900.1) | INTRON |