Detailed information of SNP:
|
SNP ID:
sf0220935793(Gbrowse)
Chromosome: chr02 Position: 20935793 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 92.98% | 7.02% |
| All Indica | 796 | 93.22% | 6.78% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 40.62% | 59.38% |
| Indica I | 373 | 88.47% | 11.53% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220935793 | G->A | LOC_Os02g34900(LOC_Os02g34900.1) | INTRON |