Detailed information of SNP:
|
SNP ID:
sf0220947512(Gbrowse)
Chromosome: chr02 Position: 20947512 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 95.29% | 4.71% |
| All Indica | 775 | 96.39% | 3.61% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 57 | 40.35% | 59.65% |
| Indica I | 356 | 95.79% | 4.21% |
| Indica II | 209 | 99.52% | 0.48% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220947512 | C->T | INTERGENIC | None |