Detailed information of SNP:
|
SNP ID:
sf0220954331(Gbrowse)
Chromosome: chr02 Position: 20954331 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 96.69% | 3.31% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 497 | 91.75% | 8.25% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 91.34% | 8.66% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220954331 | C->T | LOC_Os02g34940(LOC_Os02g34940.2) | INTRON |
| sf0220954331 | C->T | LOC_Os02g34940(LOC_Os02g34940.1) | INTRON |