Detailed information of SNP:
|
SNP ID:
sf0220957165(Gbrowse)
Chromosome: chr02 Position: 20957165 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 64.81% | 35.19% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 9.55% | 90.45% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220957165 | A->G | LOC_Os02g34950(LOC_Os02g34950.1) | UTR_3_PRIME |