Detailed information of SNP:
|
SNP ID:
sf0220982986(Gbrowse)
Chromosome: chr02 Position: 20982986 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 90.32% | 9.68% |
| All Indica | 776 | 84.02% | 15.98% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 367 | 90.19% | 9.81% |
| Indica II | 205 | 75.61% | 24.39% |
| Indica Intermediate | 204 | 81.37% | 18.63% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220982986 | G->A | LOC_Os02g34990(LOC_Os02g34990.2) | INTRON |