Detailed information of SNP:
|
SNP ID:
sf0220998693(Gbrowse)
Chromosome: chr02 Position: 20998693 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 52.22% | 47.78% |
| All Indica | 799 | 30.79% | 69.21% |
| All Japonica | 497 | 90.54% | 9.46% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 90.45% | 9.55% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0220998693 | C->T | LOC_Os02g35010(LOC_Os02g35010.1) | INTRON |