Detailed information of SNP:
|
SNP ID:
sf0221004262(Gbrowse)
Chromosome: chr02 Position: 21004262 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 55.72% | 44.28% |
| All Indica | 797 | 35.88% | 64.12% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 66 | 27.27% | 72.73% |
| Indica I | 373 | 27.08% | 72.92% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 91.64% | 8.36% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221004262 | C->T | INTERGENIC | None |