Detailed information of SNP:
|
SNP ID:
sf0221004536(Gbrowse)
Chromosome: chr02 Position: 21004536 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 52.54% | 47.46% |
| All Indica | 797 | 31.12% | 68.88% |
| All Japonica | 497 | 90.74% | 9.26% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 374 | 22.46% | 77.54% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 210 | 37.14% | 62.86% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221004536 | G->T | INTERGENIC | None |