Detailed information of SNP:



SNP ID: sf0221020040(Gbrowse)

Chromosome: chr02

Position: 21020040
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1411 53.65% 46.35%
All Indica792 32.70% 67.30%
All Japonica496 91.33% 8.67%
Aus67 17.91% 82.09%
Indica I372 24.19% 75.81%
Indica II209 43.06% 56.94%
Indica Intermediate211 37.44% 62.56%
Temperate Japonica334 91.62% 8.38%
Tropical Japonica94 88.30% 11.70%
Japonica Intermediate68 94.12% 5.88%
Group VI/Aromatic14 85.71% 14.29%
Intermediate42 50.00% 50.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0221020040 C->T INTERGENIC None