Detailed information of SNP:
|
SNP ID:
sf0221020040(Gbrowse)
Chromosome: chr02 Position: 21020040 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 53.65% | 46.35% |
| All Indica | 792 | 32.70% | 67.30% |
| All Japonica | 496 | 91.33% | 8.67% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 372 | 24.19% | 75.81% |
| Indica II | 209 | 43.06% | 56.94% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221020040 | C->T | INTERGENIC | None |