Detailed information of SNP:
|
SNP ID:
sf0221047481(Gbrowse)
Chromosome: chr02 Position: 21047481 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 64.90% | 35.10% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 495 | 8.48% | 91.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 8.41% | 91.59% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221047481 | G->C | INTERGENIC | None |