Detailed information of SNP:
|
SNP ID:
sf0221158757(Gbrowse)
Chromosome: chr02 Position: 21158757 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 58.89% | 41.11% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 13 | 53.85% | 46.15% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221158757 | C->A | INTERGENIC | None |