Detailed information of SNP:
|
SNP ID:
sf0221179484(Gbrowse)
Chromosome: chr02 Position: 21179484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.07% | 49.93% |
| All Indica | 798 | 84.59% | 15.41% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 210 | 80.95% | 19.05% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 23.81% | 76.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221179484 | C->T | INTERGENIC | None |