Detailed information of SNP:



SNP ID: sf0221185827(Gbrowse)

Chromosome: chr02

Position: 21185827
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 64.27% 35.73%
All Indica799 99.37% 0.63%
All Japonica497 2.21% 97.79%
Aus67 100.00% 0.00%
Indica I375 99.73% 0.27%
Indica II213 99.53% 0.47%
Indica Intermediate211 98.58% 1.42%
Temperate Japonica335 1.19% 98.81%
Tropical Japonica94 4.26% 95.74%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 61.90% 38.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0221185827 T->C INTERGENIC None