Detailed information of SNP:
|
SNP ID:
sf0221203569(Gbrowse)
Chromosome: chr02 Position: 21203569 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 54.44% | 45.56% |
| All Indica | 791 | 82.93% | 17.07% |
| All Japonica | 497 | 5.03% | 94.97% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 370 | 89.19% | 10.81% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 210 | 79.05% | 20.95% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221203569 | C->T | LOC_Os02g35290(LOC_Os02g35290.1) | Non-Synonymous SNP |