Detailed information of SNP:
|
SNP ID:
sf0221212981(Gbrowse)
Chromosome: chr02 Position: 21212981 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 64.79% | 35.21% |
| All Indica | 735 | 38.91% | 61.09% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 335 | 38.21% | 61.79% |
| Indica II | 205 | 35.12% | 64.88% |
| Indica Intermediate | 195 | 44.10% | 55.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221212981 | C->T | INTERGENIC | None |