Detailed information of SNP:
|
SNP ID:
sf0221214665(Gbrowse)
Chromosome: chr02 Position: 21214665 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 96.11% | 3.89% |
| All Indica | 772 | 93.91% | 6.09% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 97.28% | 2.72% |
| Indica II | 204 | 88.73% | 11.27% |
| Indica Intermediate | 201 | 93.03% | 6.97% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221214665 | G->A | INTERGENIC | None |