Detailed information of SNP:
|
SNP ID:
sf0221227292(Gbrowse)
Chromosome: chr02 Position: 21227292 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1388 | 92.29% | 7.71% |
| All Indica | 788 | 89.97% | 10.03% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 51 | 76.47% | 23.53% |
| Indica I | 371 | 94.88% | 5.12% |
| Indica II | 207 | 83.57% | 16.43% |
| Indica Intermediate | 210 | 87.62% | 12.38% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221227292 | C->T | INTERGENIC | None |