Detailed information of SNP:
SNP ID:
sf0221227437(Gbrowse)
Chromosome: chr02 Position: 21227437 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1418 | 64.10% | 35.90% |
All Indica | 799 | 99.00% | 1.00% |
All Japonica | 497 | 2.41% | 97.59% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 98.93% | 1.07% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 99.05% | 0.95% |
Temperate Japonica | 335 | 0.90% | 99.10% |
Tropical Japonica | 94 | 4.26% | 95.74% |
Japonica Intermediate | 68 | 7.35% | 92.65% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0221227437 | T->C | INTERGENIC | None |