Detailed information of SNP:
|
SNP ID:
sf0221234673(Gbrowse)
Chromosome: chr02 Position: 21234673 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1295 | 56.37% | 43.63% |
| All Indica | 680 | 91.47% | 8.53% |
| All Japonica | 495 | 1.62% | 98.38% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 314 | 91.08% | 8.92% |
| Indica II | 195 | 93.33% | 6.67% |
| Indica Intermediate | 171 | 90.06% | 9.94% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221234673 | G->A | INTERGENIC | None |