Detailed information of SNP:
|
SNP ID:
sf0221333431(Gbrowse)
Chromosome: chr02 Position: 21333431 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1310 | 80.00% | 20.00% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 392 | 35.71% | 64.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 260 | 43.85% | 56.15% |
| Tropical Japonica | 78 | 17.95% | 82.05% |
| Japonica Intermediate | 54 | 22.22% | 77.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221333431 | A->G | INTERGENIC | None |