Detailed information of SNP:
|
SNP ID:
sf0221374294(Gbrowse)
Chromosome: chr02 Position: 21374294 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 69.61% | 30.39% |
| All Indica | 797 | 98.12% | 1.88% |
| All Japonica | 439 | 12.76% | 87.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 298 | 14.43% | 85.57% |
| Tropical Japonica | 82 | 9.76% | 90.24% |
| Japonica Intermediate | 59 | 8.47% | 91.53% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 34 | 70.59% | 29.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221374294 | C->G | INTERGENIC | None |