Detailed information of SNP:
|
SNP ID:
sf0221374309(Gbrowse)
Chromosome: chr02 Position: 21374309 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1159 | 52.03% | 47.97% |
| All Indica | 632 | 77.06% | 22.94% |
| All Japonica | 424 | 8.02% | 91.98% |
| Aus | 58 | 91.38% | 8.62% |
| Indica I | 285 | 57.89% | 42.11% |
| Indica II | 176 | 96.59% | 3.41% |
| Indica Intermediate | 171 | 88.89% | 11.11% |
| Temperate Japonica | 287 | 9.06% | 90.94% |
| Tropical Japonica | 78 | 3.85% | 96.15% |
| Japonica Intermediate | 59 | 8.47% | 91.53% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 34 | 58.82% | 41.18% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221374309 | T->A | INTERGENIC | None |