Detailed information of SNP:
|
SNP ID:
sf0221387323(Gbrowse)
Chromosome: chr02 Position: 21387323 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 93.32% | 6.68% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 472 | 81.57% | 18.43% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 75.24% | 24.76% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221387323 | C->T | INTERGENIC | None |