Detailed information of SNP:
|
SNP ID:
sf0221396038(Gbrowse)
Chromosome: chr02 Position: 21396038 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 61.71% | 38.29% |
| All Indica | 799 | 96.12% | 3.88% |
| All Japonica | 496 | 2.62% | 97.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 6.45% | 93.55% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221396038 | A->G | LOC_Os02g35570(LOC_Os02g35570.1) | INTRON |