Detailed information of SNP:
|
SNP ID:
sf0221430191(Gbrowse)
Chromosome: chr02 Position: 21430191 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 56.07% | 43.93% |
| All Indica | 797 | 94.98% | 5.02% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 211 | 88.15% | 11.85% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 29.27% | 70.73% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221430191 | C->T | INTERGENIC | None |