Detailed information of SNP:
|
SNP ID:
sf0221439171(Gbrowse)
Chromosome: chr02 Position: 21439171 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.82% | 47.18% |
| All Indica | 798 | 89.47% | 10.53% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 90.40% | 9.60% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221439171 | C->T | LOC_Os02g35670(LOC_Os02g35670.1) | Non-Synonymous SNP |