Detailed information of SNP:
|
SNP ID:
sf0221501395(Gbrowse)
Chromosome: chr02 Position: 21501395 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 96.64% | 3.36% |
| All Indica | 795 | 99.37% | 0.63% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 49 | 28.57% | 71.43% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 98.57% | 1.43% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221501395 | C->A | LOC_Os02g35790(LOC_Os02g35790.1) | INTRON |