Detailed information of SNP:
|
SNP ID:
sf0221514363(Gbrowse)
Chromosome: chr02 Position: 21514363 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.46% | 37.54% |
| All Indica | 798 | 36.34% | 63.66% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 21.87% | 78.13% |
| Indica II | 212 | 63.21% | 36.79% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221514363 | C->A | LOC_Os02g35820(LOC_Os02g35820.2) | Non-Synonymous SNP |
| sf0221514363 | C->A | LOC_Os02g35820(LOC_Os02g35820.1) | Non-Synonymous SNP |