Detailed information of SNP:
|
SNP ID:
sf0221561128(Gbrowse)
Chromosome: chr02 Position: 21561128 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 79.05% | 20.95% |
| All Indica | 788 | 63.58% | 36.42% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 50.54% | 49.46% |
| Indica II | 209 | 81.34% | 18.66% |
| Indica Intermediate | 209 | 68.90% | 31.10% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221561128 | T->C | INTERGENIC | None |