Detailed information of SNP:
|
SNP ID:
sf0221569816(Gbrowse)
Chromosome: chr02 Position: 21569816 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.15% | 37.85% |
| All Indica | 796 | 97.74% | 2.26% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221569816 | T->C | INTERGENIC | None |