Detailed information of SNP:
|
SNP ID:
sf0221585101(Gbrowse)
Chromosome: chr02 Position: 21585101 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 77.92% | 22.08% |
| All Indica | 793 | 61.79% | 38.21% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 47.84% | 52.16% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221585101 | T->C | INTERGENIC | None |