Detailed information of SNP:
|
SNP ID:
sf0221644175(Gbrowse)
Chromosome: chr02 Position: 21644175 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 56.64% | 43.36% |
| All Indica | 780 | 24.87% | 75.13% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 366 | 14.48% | 85.52% |
| Indica II | 206 | 50.49% | 49.51% |
| Indica Intermediate | 208 | 17.79% | 82.21% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221644175 | A->G | INTERGENIC | None |