Detailed information of SNP:
|
SNP ID:
sf0221650132(Gbrowse)
Chromosome: chr02 Position: 21650132 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1337 | 67.99% | 32.01% |
| All Indica | 727 | 46.63% | 53.37% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 58 | 55.17% | 44.83% |
| Indica I | 327 | 37.00% | 63.00% |
| Indica II | 206 | 64.08% | 35.92% |
| Indica Intermediate | 194 | 44.33% | 55.67% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221650132 | C->A | INTERGENIC | None |