Detailed information of SNP:
|
SNP ID:
sf0221652462(Gbrowse)
Chromosome: chr02 Position: 21652462 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 83.12% | 16.88% |
| All Indica | 778 | 77.76% | 22.24% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 367 | 90.74% | 9.26% |
| Indica II | 207 | 45.89% | 54.11% |
| Indica Intermediate | 204 | 86.76% | 13.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221652462 | A->G | INTERGENIC | None |