Detailed information of SNP:
|
SNP ID:
sf0221666520(Gbrowse)
Chromosome: chr02 Position: 21666520 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1410 | 50.71% | 49.29% |
| All Indica | 790 | 78.61% | 21.39% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 371 | 75.20% | 24.80% |
| Indica II | 209 | 84.69% | 15.31% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221666520 | A->G | LOC_Os02g36050(LOC_Os02g36050.1) | INTRON |