Detailed information of SNP:
|
SNP ID:
sf0221673829(Gbrowse)
Chromosome: chr02 Position: 21673829 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1282 | 82.29% | 17.71% |
| All Indica | 672 | 70.83% | 29.17% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 62 | 62.90% | 37.10% |
| Indica I | 300 | 61.67% | 38.33% |
| Indica II | 184 | 80.98% | 19.02% |
| Indica Intermediate | 188 | 75.53% | 24.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 98.48% | 1.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221673829 | G->A | LOC_Os02g36060(LOC_Os02g36060.1) | Synonymous |