Detailed information of SNP:
|
SNP ID:
sf0221688427(Gbrowse)
Chromosome: chr02 Position: 21688427 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1397 | 70.37% | 29.63% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 477 | 21.38% | 78.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 319 | 22.26% | 77.74% |
| Tropical Japonica | 93 | 18.28% | 81.72% |
| Japonica Intermediate | 65 | 21.54% | 78.46% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221688427 | A->G | INTERGENIC | None |