Detailed information of SNP:
|
SNP ID:
sf0221689434(Gbrowse)
Chromosome: chr02 Position: 21689434 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 86.73% | 13.27% |
| All Indica | 789 | 78.20% | 21.80% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 204 | 51.96% | 48.04% |
| Indica Intermediate | 210 | 76.67% | 23.33% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221689434 | C->A | INTERGENIC | None |