Detailed information of SNP:
|
SNP ID:
sf0221695277(Gbrowse)
Chromosome: chr02 Position: 21695277 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 51.06% | 48.94% |
| All Indica | 799 | 24.78% | 75.22% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 11.94% | 88.06% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 211 | 26.07% | 73.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221695277 | G->A | LOC_Os02g36080(LOC_Os02g36080.1) | INTRON |