Detailed information of SNP:
|
SNP ID:
sf0221711166(Gbrowse)
Chromosome: chr02 Position: 21711166 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1386 | 97.19% | 2.81% |
| All Indica | 767 | 95.18% | 4.82% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 94.83% | 5.17% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221711166 | T->C | INTERGENIC | None |