Detailed information of SNP:
|
SNP ID:
sf0221711920(Gbrowse)
Chromosome: chr02 Position: 21711920 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 89.21% | 10.79% |
| All Indica | 771 | 82.36% | 17.64% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 372 | 96.24% | 3.76% |
| Indica II | 204 | 53.92% | 46.08% |
| Indica Intermediate | 195 | 85.64% | 14.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221711920 | G->A | INTERGENIC | None |