Detailed information of SNP:
|
SNP ID:
sf0221719521(Gbrowse)
Chromosome: chr02 Position: 21719521 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 63.05% | 36.95% |
| All Indica | 791 | 95.45% | 4.55% |
| All Japonica | 496 | 9.68% | 90.32% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 334 | 6.89% | 93.11% |
| Tropical Japonica | 94 | 20.21% | 79.79% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221719521 | C->T | LOC_Os02g36100(LOC_Os02g36100.1) | Synonymous |