Detailed information of SNP:
|
SNP ID:
sf0221735515(Gbrowse)
Chromosome: chr02 Position: 21735515 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 52.64% | 47.36% |
| All Indica | 799 | 81.73% | 18.27% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221735515 | C->T | LOC_Os02g36110(LOC_Os02g36110.1) | Synonymous |