Detailed information of SNP:
|
SNP ID:
sf0221747428(Gbrowse)
Chromosome: chr02 Position: 21747428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 91.76% | 8.24% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 487 | 77.62% | 22.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 327 | 70.64% | 29.36% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 66 | 81.82% | 18.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221747428 | C->T | INTERGENIC | None |