Detailed information of SNP:
|
SNP ID:
sf0221762307(Gbrowse)
Chromosome: chr02 Position: 21762307 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.06% | 35.94% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 5.84% | 94.16% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 2.69% | 97.31% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221762307 | A->G | LOC_Os02g36140(LOC_Os02g36140.3) | Synonymous |
| sf0221762307 | A->G | LOC_Os02g36140(LOC_Os02g36140.2) | Synonymous |
| sf0221762307 | A->G | LOC_Os02g36140(LOC_Os02g36140.4) | Synonymous |
| sf0221762307 | A->G | LOC_Os02g36140(LOC_Os02g36140.5) | Synonymous |