Detailed information of SNP:
|
SNP ID:
sf0221792061(Gbrowse)
Chromosome: chr02 Position: 21792061 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1363 | 81.80% | 18.20% |
| All Indica | 797 | 99.62% | 0.38% |
| All Japonica | 447 | 50.34% | 49.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 299 | 59.87% | 40.13% |
| Tropical Japonica | 90 | 33.33% | 66.67% |
| Japonica Intermediate | 58 | 27.59% | 72.41% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0221792061 | C->T | LOC_Os02g36170(LOC_Os02g36170.1) | Non-Synonymous SNP |